PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 797aa    MW: 88775.3 Da    PI: 5.4981
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006720genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-315466471101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaCk++ r+  +dC l+p fpa+qpk f+ vh+lFG+s+v+k+lk++++++ + dam+s+++e+ +r + Pv+G++g+i++l q+l+q+ +el+++
  DCAR_006720 546 ACAACKFQTRRYHSDCSLSPFFPADQPKIFNDVHRLFGVSKVIKILKKMRDHDqKVDAMKSIIFESYIREKYPVHGCFGIISQLDQELHQATEELHYV 643
                  7************************************************877759******************************************9 PP

       DUF260  98 keel 101
                  +++l
  DCAR_006720 644 RAQL 647
                  9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533356.23E-96134520IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF026361.8E-71182443IPR003788Putative S-adenosyl-L-methionine-dependent methyltransferase MidA
PROSITE profilePS5089121.27545647IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-30546644IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MLRRLLLQPQ PSTQRRRILS LYRHCSSSST TSGEAPVSSF VEHLEDDNYD VSKHSSPQSS  60
ATLSIDRSGL YNPPGLSLSL SPPLPLPPPL SSTFLHIYVY VNNIYSGYVY IAEHSHEPSS  120
DSELVKHLKG IIKFRGGPIS IAEYMEEVLT NPKAGFYMNR DVFGEGGDFI TSPDVSQMFG  180
EMVGVWAMCL WEQMGRPSKV NLIELGPGRG TLMADLLRGS SKMKEFTKSL NIHMVECSPA  240
LQKLQYKKLE CIDEDGDDKN VDNHVVSALT GSPISWHTML EQVPTGVPTI IIAHEFYDAL  300
PVHQFQKASR GWCEKMVDVA EDDTFRIVLS PQPTPATLYL LQRCKWAETE DISKLNQIEV  360
CPKAMDLTQN IAKRISSDGG GALIIDYGLN GIVSDSLQAI RKHKFVNILD KPGSADLSAY  420
VDFSAIKHSA EEAADDVSVH GPITQSQFLG SLGINFRVEA LLQNCTEEQA ESLRTGYWRL  480
VGEGEAPFWE GPDDQAPIGM GTRYMAMSIV NKKQGTPAPF QIGLYIYKLF IIQSRRMKLK  540
GGPNKACAAC KFQTRRYHSD CSLSPFFPAD QPKIFNDVHR LFGVSKVIKI LKKMRDHDQK  600
VDAMKSIIFE SYIREKYPVH GCFGIISQLD QELHQATEEL HYVRAQLSML KENNSQSSQI  660
MNSYDVASEN NDNGAFYSDQ SGDQTKSFMN LNSYYSDGMS DDNKLLEIQT QFGDSNTFAL  720
NHSQVGEASD QDYDIMNLYA IDDQSSKEAC ESSSESSCKD GKQQVELVPK NELKSAAAYF  780
SLMSINSDQV THPVVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1zkd_B1e-691224865341DUF185
1zkd_A1e-691224865341DUF185
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082860.10.0PREDICTED: NADH dehydrogenase
TrEMBLA0A067LL510.0A0A067LL51_JATCU; Uncharacterized protein
STRINGSolyc02g087640.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-38LOB domain-containing protein 27